Computational Genomics

Thousands of single-cells can be profiled using next generation sequencing technologies, and this leads to a massive amount of data which needs processing and analysing to determine the underlying biology of the samples assayed. Key to this is data visualisation, and a common step is to generate "maps" of cells which make the data human-comprehensible. The maps are often constructed in three dimension, but current methods to visualise 3D data are poor.

Our lab is pioneering the use of virtual reality (VR) to display big-data in a way which is immersive and fully interactive. Researchers have full 3D access to all aspects of their data, and an array of virtual tools to analyse it.

Impact

List of Team Soneji's publications

Team

(name linked to profile in Lund University research portal)

Shamit Soneji

Principal Investigator, Shamit [dot] Soneji [at] med [dot] lu [dot] se (Shamit[dot]Soneji[at]med[dot]lu[dot]se)

Stefan Lang

Postdoc, Stefan [dot] Lang [at] med [dot] lu [dot] se (Stefan[dot]Lang[at]med[dot]lu[dot]se)

Oscar Legetth

Software Engineer, Oscar [dot] Legetth [at] med [dot] lu [dot] se (Oscar[dot]Legetth[at]med[dot]lu[dot]se)